Variant report

Variant	rs9810360
Chromosome Location	chr3:142509524-142509525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142507890..142510274-chr3:142511932..142515153,5	K562	blood:
2	chr3:142502229..142505111-chr3:142507605..142510534,2	K562	blood:
3	chr3:142507887..142510274-chr3:142511921..142514171,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10049098	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10049364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10935469	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12330897	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs12330901	1.00[AMR][1000 genomes]
rs13320613	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13322816	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13325615	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434361	1.00[AMR][1000 genomes]
rs16834067	1.00[AMR][1000 genomes]
rs16852648	1.00[AMR][1000 genomes]
rs16852649	1.00[AMR][1000 genomes]
rs16852658	1.00[AMR][1000 genomes]
rs1916641	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373594	1.00[AMR][1000 genomes]
rs28460347	1.00[AMR][1000 genomes]
rs28505293	1.00[AMR][1000 genomes]
rs28564963	1.00[AMR][1000 genomes]
rs28572271	1.00[AMR][1000 genomes]
rs28678273	1.00[AMR][1000 genomes]
rs28728040	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58015805	1.00[AMR][1000 genomes]
rs6798447	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs72988606	1.00[AMR][1000 genomes]
rs72988611	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988625	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72990716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992624	1.00[AMR][1000 genomes]
rs72992644	1.00[AMR][1000 genomes]
rs72992647	1.00[AMR][1000 genomes]
rs72992650	1.00[AMR][1000 genomes]
rs73002086	1.00[AMR][1000 genomes]
rs73002087	1.00[AMR][1000 genomes]
rs7622773	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7637053	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638554	0.83[AFR][1000 genomes]
rs7641418	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9289650	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9809475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810606	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811051	0.90[AFR][1000 genomes]
rs9819681	1.00[AMR][1000 genomes]
rs9823492	0.94[YRI][hapmap]
rs9826191	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9827373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837730	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs9839771	1.00[AMR][1000 genomes]
rs9846572	1.00[AMR][1000 genomes]
rs9847616	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850432	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863330	1.00[AMR][1000 genomes]
rs9867286	1.00[AMR][1000 genomes]
rs9867886	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875489	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9877174	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9877670	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9879367	1.00[AMR][1000 genomes]
rs9882985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142468200-142511000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:142468200-142525200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:142468400-142525200	Weak transcription	Fetal Brain Male	brain
4	chr3:142468400-142526800	Weak transcription	NHDF-Ad	bronchial
5	chr3:142468400-142529400	Weak transcription	Brain Germinal Matrix	brain
6	chr3:142468600-142525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:142468800-142513200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:142472400-142509800	Weak transcription	HepG2	liver
9	chr3:142475000-142527200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:142487400-142513600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:142488800-142527000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:142490200-142529400	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:142490400-142522800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:142495400-142527000	Weak transcription	Brain Angular Gyrus	brain
15	chr3:142497600-142514200	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:142498600-142517400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:142498600-142522800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:142498600-142526800	Weak transcription	Osteobl	bone
19	chr3:142499000-142527000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:142501600-142525000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:142501600-142525600	Weak transcription	Fetal Stomach	stomach
23	chr3:142501800-142518400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:142501800-142521400	Weak transcription	Ovary	ovary
25	chr3:142501800-142527000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:142501800-142528000	Weak transcription	Left Ventricle	heart
27	chr3:142501800-142535600	Weak transcription	Aorta	Aorta
28	chr3:142502000-142511600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:142502000-142514000	Weak transcription	HSMM	muscle
30	chr3:142502000-142521400	Weak transcription	Adipose Nuclei	Adipose
31	chr3:142502000-142529400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:142502400-142514200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:142502400-142522800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:142504000-142511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:142504000-142521400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:142504200-142512800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:142504200-142523200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:142507000-142521600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:142508800-142510600	Enhancers	Fetal Intestine Large	intestine
40	chr3:142509000-142509600	Enhancers	H1 Cell Line	embryonic stem cell
41	chr3:142509000-142510200	Genic enhancers	A549	lung
42	chr3:142509000-142511000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:142509200-142509600	Enhancers	Fetal Intestine Small	intestine
44	chr3:142509200-142511000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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