Variant report

Variant	rs9810378
Chromosome Location	chr3:23328052-23328053
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17013009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013099	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548892	1.00[AMR][1000 genomes]
rs28567933	1.00[AMR][1000 genomes]
rs28641973	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57747253	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58047209	1.00[AMR][1000 genomes]
rs58879825	1.00[AMR][1000 genomes]
rs61081559	1.00[AMR][1000 genomes]
rs61500565	1.00[AMR][1000 genomes]
rs61636332	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768277	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6795043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138415	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138434	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138436	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138449	1.00[AMR][1000 genomes]
rs73138480	1.00[AMR][1000 genomes]
rs73138490	1.00[AMR][1000 genomes]
rs73138492	1.00[AMR][1000 genomes]
rs73140509	1.00[AMR][1000 genomes]
rs73140514	1.00[AMR][1000 genomes]
rs73149654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149686	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149689	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634565	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7646028	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7652287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9310716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9681506	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9809364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811442	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9819566	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9819788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9821681	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9829577	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834737	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9842159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9845340	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9852053	1.00[AMR][1000 genomes]
rs9861614	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9866889	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9869171	1.00[AMR][1000 genomes]
rs9878638	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9879132	1.00[AMR][1000 genomes]
rs9879217	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
2	chr3:23314400-23330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:23321000-23329800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:23321600-23332600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:23322600-23330800	Weak transcription	Aorta	Aorta
6	chr3:23325400-23330400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:23325400-23334000	Weak transcription	Left Ventricle	heart
8	chr3:23325600-23329600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:23325600-23330200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:23328000-23329200	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr3:23328000-23334200	Weak transcription	Pancreas	Pancrea

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