Variant report

Variant	rs9811051
Chromosome Location	chr3:142481295-142481296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10049098	0.91[AFR][1000 genomes]
rs10049364	0.91[AFR][1000 genomes]
rs10935469	0.91[AFR][1000 genomes]
rs13320613	0.88[AFR][1000 genomes]
rs13325615	0.84[AFR][1000 genomes]
rs1916641	0.84[AFR][1000 genomes]
rs28728040	0.81[AFR][1000 genomes]
rs41265485	0.90[EUR][1000 genomes]
rs72988611	0.84[AFR][1000 genomes]
rs72988625	0.84[AFR][1000 genomes]
rs72990716	0.88[AFR][1000 genomes]
rs7622773	0.83[AFR][1000 genomes]
rs7637053	0.90[AFR][1000 genomes]
rs7638554	0.83[AFR][1000 genomes]
rs7641418	0.91[AFR][1000 genomes]
rs9289650	0.84[AFR][1000 genomes]
rs9809475	0.91[AFR][1000 genomes]
rs9810360	0.90[AFR][1000 genomes]
rs9810606	0.90[AFR][1000 genomes]
rs9826191	0.88[AFR][1000 genomes]
rs9827373	0.91[AFR][1000 genomes]
rs9836232	0.91[AFR][1000 genomes]
rs9847616	0.90[AFR][1000 genomes]
rs9850432	0.91[AFR][1000 genomes]
rs9867886	0.84[AFR][1000 genomes]
rs9875489	0.84[AFR][1000 genomes]
rs9882985	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591920	chr3:142411200-142496951	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv521098	chr3:142411200-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv518623	chr3:142417070-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142452800-142489000	Weak transcription	Aorta	Aorta
2	chr3:142458000-142482800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:142464800-142493200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:142466000-142488400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:142467800-142503400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:142468000-142486800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:142468200-142486800	Weak transcription	Brain Anterior Caudate	brain
8	chr3:142468200-142487600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:142468200-142489800	Weak transcription	Ovary	ovary
10	chr3:142468200-142511000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:142468200-142525200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:142468400-142483000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:142468400-142483200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:142468400-142484000	Weak transcription	Fetal Lung	lung
15	chr3:142468400-142488200	Weak transcription	A549	lung
16	chr3:142468400-142489800	Weak transcription	NH-A	brain
17	chr3:142468400-142498000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:142468400-142501400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:142468400-142501400	Weak transcription	HSMM	muscle
20	chr3:142468400-142501600	Weak transcription	Left Ventricle	heart
21	chr3:142468400-142508800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:142468400-142525200	Weak transcription	Fetal Brain Male	brain
23	chr3:142468400-142526800	Weak transcription	NHDF-Ad	bronchial
24	chr3:142468400-142529400	Weak transcription	Brain Germinal Matrix	brain
25	chr3:142468600-142484000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:142468600-142525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:142468800-142481800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:142468800-142492000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:142468800-142513200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:142469200-142491200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:142469600-142483200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:142469800-142485600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:142470200-142483600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:142470600-142486800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:142470600-142505800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr3:142472400-142509800	Weak transcription	HepG2	liver
37	chr3:142475000-142527200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr3:142475200-142498200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:142477400-142483400	Weak transcription	Adipose Nuclei	Adipose
40	chr3:142477600-142483800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:142479400-142481400	Weak transcription	Fetal Stomach	stomach
42	chr3:142479400-142486600	Weak transcription	Fetal Brain Female	brain
43	chr3:142479400-142488200	Weak transcription	Fetal Muscle Leg	muscle
44	chr3:142480000-142482400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:142480800-142482200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:142481000-142483800	Weak transcription	Fetal Kidney	kidney
47	chr3:142481200-142483600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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