Variant report

Variant	rs9812616
Chromosome Location	chr3:23237608-23237609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11917849	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325712	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6550744	0.83[AFR][1000 genomes]
rs9847733	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9850944	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23237200-23237800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:23237200-23237800	Enhancers	Adipose Nuclei	Adipose
3	chr3:23237200-23237800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:23237400-23237800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:23237400-23237800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:23237600-23237800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:23237600-23237800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:23237600-23237800	Enhancers	Aorta	Aorta
9	chr3:23237600-23242800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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