Variant report

Variant	rs981392
Chromosome Location	chr6:150963525-150963526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12198116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs275344	0.92[JPT][hapmap]
rs275345	0.92[JPT][hapmap]
rs6557549	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6906716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931488	0.91[CHB][hapmap]
rs9372083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9384570	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs9384571	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs9384572	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397340	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150955600-150963600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:150955800-150972400	Weak transcription	Fetal Stomach	stomach
3	chr6:150958200-150971200	Weak transcription	Left Ventricle	heart
4	chr6:150959800-150963800	Weak transcription	Gastric	stomach
5	chr6:150959800-150965200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:150959800-150987400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:150960000-150963600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150960400-150980600	Weak transcription	Stomach Mucosa	stomach
9	chr6:150961600-150975200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:150961600-150980200	Weak transcription	Lung	lung
11	chr6:150961800-150963600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:150961800-150972600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:150962000-150963600	Weak transcription	Spleen	Spleen
14	chr6:150962000-150965000	Enhancers	Thymus	Thymus
15	chr6:150962200-150963600	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr6:150962400-150963600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:150962400-150963800	Active TSS	Aorta	Aorta
18	chr6:150962400-150963800	Weak transcription	Small Intestine	intestine
19	chr6:150962600-150964200	Enhancers	Rectal Smooth Muscle	rectum
20	chr6:150962800-150963600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:150962800-150963600	Weak transcription	Ovary	ovary
22	chr6:150962800-150963800	Enhancers	Primary hematopoietic stem cells	blood
23	chr6:150962800-150965000	Genic enhancers	Fetal Thymus	thymus
24	chr6:150963000-150963600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:150963000-150963600	Weak transcription	Right Atrium	heart
26	chr6:150963000-150963800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:150963000-150963800	Weak transcription	Brain Angular Gyrus	brain
28	chr6:150963000-150963800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:150963000-150963800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:150963000-150964000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:150963000-150964000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:150963000-150964000	Enhancers	HMEC	breast
33	chr6:150963000-150964200	Enhancers	Adipose Nuclei	Adipose
34	chr6:150963000-150964600	Enhancers	Brain Substantia Nigra	brain
35	chr6:150963000-150964800	Enhancers	Fetal Kidney	kidney
36	chr6:150963000-150965000	Enhancers	Primary B cells from peripheral blood	blood
37	chr6:150963000-150967400	Weak transcription	Fetal Brain Male	brain
38	chr6:150963000-150979200	Weak transcription	Fetal Lung	lung
39	chr6:150963200-150963600	Flanking Active TSS	Liver	Liver
40	chr6:150963200-150963600	Active TSS	GM12878-XiMat	blood
41	chr6:150963200-150963800	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr6:150963200-150967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:150963400-150963800	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr6:150963400-150964000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:150963400-150964000	Enhancers	Brain Hippocampus Middle	brain
46	chr6:150963400-150964600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr6:150963400-150964600	Enhancers	Brain Anterior Caudate	brain

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