Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11127740	0.81[CEU][hapmap]
rs11710970	0.92[CEU][hapmap]
rs11711331	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs11915042	0.85[EUR][1000 genomes]
rs13072957	0.80[CEU][hapmap]
rs13080520	0.80[EUR][1000 genomes]
rs13088000	0.85[EUR][1000 genomes]
rs13099615	0.81[CEU][hapmap]
rs2053805	0.80[CEU][hapmap]
rs2290081	0.83[EUR][1000 genomes]
rs3772882	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3772883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3772884	0.80[CEU][hapmap]
rs3772896	0.92[CEU][hapmap]
rs3772912	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3821548	0.92[CEU][hapmap]
rs3821551	0.81[CEU][hapmap]
rs3849570	0.96[CEU][hapmap]
rs3849571	0.92[CEU][hapmap]
rs3860595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3943556	0.81[CEU][hapmap]
rs4411908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6548773	0.85[EUR][1000 genomes]
rs7620240	0.92[CEU][hapmap]
rs7634258	0.80[CEU][hapmap]
rs9817181	0.86[EUR][1000 genomes]
rs9826270	0.85[EUR][1000 genomes]
rs9842330	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9818006	GBE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81827000-81828400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:81827400-81828400	Enhancers	Fetal Lung	lung
3	chr3:81827400-81828400	Enhancers	NHLF	lung
4	chr3:81827800-81828400	Enhancers	Dnd41	blood
5	chr3:81827800-81828600	ZNF genes & repeats	GM12878-XiMat	blood
6	chr3:81828000-81828400	Enhancers	Adipose Nuclei	Adipose
7	chr3:81828000-81828400	Enhancers	Fetal Heart	heart
8	chr3:81828200-81830000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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