Variant report

Variant	rs9820811
Chromosome Location	chr3:119474320-119474321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13316467	1.00[AFR][1000 genomes]
rs13316524	1.00[AFR][1000 genomes]
rs13318819	0.85[AFR][1000 genomes]
rs28370398	1.00[AFR][1000 genomes]
rs28415065	1.00[AFR][1000 genomes]
rs28464044	1.00[AFR][1000 genomes]
rs28484588	1.00[AFR][1000 genomes]
rs28595123	1.00[AFR][1000 genomes]
rs28678836	1.00[AFR][1000 genomes]
rs6795467	1.00[AFR][1000 genomes]
rs7617259	0.90[AFR][1000 genomes]
rs7618191	0.90[AFR][1000 genomes]
rs9289133	1.00[AFR][1000 genomes]
rs9809148	0.86[AFR][1000 genomes]
rs9810454	1.00[AFR][1000 genomes]
rs9811271	1.00[AFR][1000 genomes]
rs9813490	0.90[AFR][1000 genomes]
rs9814138	1.00[AFR][1000 genomes]
rs9815987	1.00[AFR][1000 genomes]
rs9817771	1.00[AFR][1000 genomes]
rs9819218	1.00[AFR][1000 genomes]
rs9824097	1.00[AFR][1000 genomes]
rs9834015	0.90[AFR][1000 genomes]
rs9835381	1.00[AFR][1000 genomes]
rs9837808	1.00[AFR][1000 genomes]
rs9842101	1.00[AFR][1000 genomes]
rs9844223	0.90[AFR][1000 genomes]
rs9844543	0.90[AFR][1000 genomes]
rs9847782	0.90[AFR][1000 genomes]
rs9851058	1.00[AFR][1000 genomes]
rs9853426	1.00[AFR][1000 genomes]
rs9856637	0.85[AFR][1000 genomes]
rs9858328	1.00[AFR][1000 genomes]
rs9859568	0.90[AFR][1000 genomes]
rs9860171	1.00[AFR][1000 genomes]
rs9864160	0.95[AFR][1000 genomes]
rs9865259	1.00[AFR][1000 genomes]
rs9866905	1.00[AFR][1000 genomes]
rs9870607	1.00[AFR][1000 genomes]
rs9875512	1.00[AFR][1000 genomes]
rs9881432	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3426402	chr3:119472162-119475860	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119435400-119478200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:119451200-119475200	Weak transcription	Fetal Brain Male	brain
3	chr3:119463200-119476000	Weak transcription	Spleen	Spleen
4	chr3:119465600-119474400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:119470000-119474400	Strong transcription	Ovary	ovary
6	chr3:119470600-119474600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr3:119471000-119479400	Weak transcription	Brain Substantia Nigra	brain
8	chr3:119471200-119474800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:119471200-119475200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:119471200-119475800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:119472200-119474400	Strong transcription	Fetal Kidney	kidney
12	chr3:119472200-119474400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr3:119472600-119474400	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr3:119473000-119479400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:119473800-119476600	Weak transcription	Brain Anterior Caudate	brain
16	chr3:119473800-119484800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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