Variant report

Variant	rs9821051
Chromosome Location	chr3:143245008-143245009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143236585..143238869-chr3:143242252..143245148,2	K562	blood:

Variant related genes	Relation type
ENSG00000243759	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12107201	1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs12107992	1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs1405018	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1525864	0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs16853716	1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs1837611	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs3849196	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58829294	0.92[ASN][1000 genomes]
rs58992171	0.92[ASN][1000 genomes]
rs6769520	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7624412	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs973826	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828276	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs9872790	1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9873052	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs9873297	0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs9883866	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs996017	1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143212600-143247400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143223000-143256200	Weak transcription	Esophagus	oesophagus
3	chr3:143239200-143255200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:143241800-143251400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:143242000-143248000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:143243600-143247400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:143244000-143246800	Enhancers	HSMM	muscle
8	chr3:143244000-143247000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:143244200-143245200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:143244200-143245200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:143244200-143245400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:143244200-143245400	Enhancers	Osteobl	bone
13	chr3:143244200-143245600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:143244200-143245600	Enhancers	NHDF-Ad	bronchial
15	chr3:143244200-143245800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:143244200-143245800	Enhancers	Adipose Nuclei	Adipose
17	chr3:143244200-143247800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:143244200-143249000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:143244400-143245200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:143244400-143245600	Enhancers	Fetal Lung	lung
21	chr3:143244400-143245800	Enhancers	Primary hematopoietic stem cells	blood
22	chr3:143244400-143249000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:143244800-143245200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr3:143244800-143247400	Enhancers	Primary B cells from peripheral blood	blood
25	chr3:143245000-143245200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:143245000-143245200	Enhancers	Ovary	ovary
27	chr3:143245000-143245200	Flanking Active TSS	HSMMtube	muscle
28	chr3:143245000-143245200	Enhancers	NHLF	lung
29	chr3:143245000-143245400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:143245000-143245400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:143245000-143245400	Enhancers	Aorta	Aorta
32	chr3:143245000-143245400	Flanking Active TSS	Dnd41	blood
33	chr3:143245000-143246800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr3:143245000-143247400	Enhancers	Primary B cells from cord blood	blood

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