Variant report

Variant	rs9821286
Chromosome Location	chr3:34773598-34773599
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6766062	1.00[EUR][1000 genomes]
rs7621355	1.00[EUR][1000 genomes]
rs9818223	1.00[EUR][1000 genomes]
rs9840827	1.00[EUR][1000 genomes]
rs9855532	1.00[EUR][1000 genomes]
rs9860161	1.00[EUR][1000 genomes]
rs9860822	1.00[EUR][1000 genomes]
rs9879716	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997333	chr3:34734012-34795588	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1014239	chr3:34734012-34806671	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34772800-34773800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:34773000-34773800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:34773000-34773800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:34773000-34774000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:34773200-34773600	Enhancers	Fetal Muscle Trunk	muscle
6	chr3:34773400-34773800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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