Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11707139	0.87[EUR][1000 genomes]
rs11709623	0.87[EUR][1000 genomes]
rs11709732	0.90[EUR][1000 genomes]
rs11714481	0.87[EUR][1000 genomes]
rs11716065	0.87[EUR][1000 genomes]
rs11717848	0.90[EUR][1000 genomes]
rs11718046	0.90[EUR][1000 genomes]
rs11718836	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11720675	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11721271	0.90[EUR][1000 genomes]
rs17016187	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17016204	0.83[ASN][1000 genomes]
rs17016260	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17588596	0.86[CEU][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs1984597	0.83[ASN][1000 genomes]
rs2164476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs57697446	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6550962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6550963	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6550966	0.90[EUR][1000 genomes]
rs7615094	0.90[EUR][1000 genomes]
rs7623030	0.86[EUR][1000 genomes]
rs7649070	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9818293	0.83[ASN][1000 genomes]
rs9837851	0.83[ASN][1000 genomes]
rs9877461	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv876632	chr3:25325479-25366205	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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