Variant report

Variant	rs9823178
Chromosome Location	chr3:81494557-81494558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11920270	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11922101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs13319440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1461607	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1984974	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2291593	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs3821555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58339236	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58977050	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59161789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60844651	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6762839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72904318	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73853334	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7617859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7619190	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs7629051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7652717	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9309873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9815184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9820089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9823805	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9828209	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9828883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9842657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs9848657	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9865935	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9876575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81486800-81503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:81491400-81497800	Enhancers	Osteobl	bone
3	chr3:81492000-81494600	Enhancers	NHDF-Ad	bronchial
4	chr3:81492000-81499600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:81492800-81500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:81493600-81503000	Weak transcription	Aorta	Aorta
7	chr3:81493800-81495600	Weak transcription	Adipose Nuclei	Adipose
8	chr3:81493800-81497600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:81494000-81495800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:81494200-81494800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:81494200-81495600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:81494400-81495000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:81494400-81498200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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