Variant report

Variant	rs9824548
Chromosome Location	chr3:142642406-142642407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr3:142642193-142643103	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000243818	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1036691	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1457684	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs1457685	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1463559	0.83[EUR][1000 genomes]
rs2581619	0.82[CEU][hapmap];0.94[CHB][hapmap];0.83[EUR][1000 genomes]
rs2581620	0.82[CEU][hapmap];0.94[CHB][hapmap];0.83[EUR][1000 genomes]
rs2581626	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2581629	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2581635	0.82[EUR][1000 genomes]
rs2581636	0.82[CEU][hapmap]
rs2581637	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs2608070	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs2608075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2608078	0.83[EUR][1000 genomes]
rs2608079	0.83[EUR][1000 genomes]
rs2619147	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2707973	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs2707975	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs2707977	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2707983	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs2707991	0.83[EUR][1000 genomes]
rs2707996	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2707997	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683435	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6778732	0.81[EUR][1000 genomes]
rs893885	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs984593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links