Variant report

Variant	rs9824579
Chromosome Location	chr3:34448961-34448962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1013979	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1191622	0.99[ASN][1000 genomes]
rs1191624	0.93[ASN][1000 genomes]
rs1191625	0.86[ASN][1000 genomes]
rs1211518	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1212278	0.93[ASN][1000 genomes]
rs12186048	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12487411	0.93[ASN][1000 genomes]
rs12629841	0.89[ASN][1000 genomes]
rs13083647	0.88[ASN][1000 genomes]
rs1317104	0.99[ASN][1000 genomes]
rs1358615	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1358616	0.88[ASN][1000 genomes]
rs1406568	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518885	0.94[ASN][1000 genomes]
rs1518886	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1518887	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529075	0.94[ASN][1000 genomes]
rs17031629	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17031637	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881685	0.97[ASN][1000 genomes]
rs1919621	0.93[ASN][1000 genomes]
rs1919622	0.88[ASN][1000 genomes]
rs1949470	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2077806	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2167040	0.92[ASN][1000 genomes]
rs2218729	0.92[ASN][1000 genomes]
rs2951002	0.96[ASN][1000 genomes]
rs34843235	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34896219	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35488362	0.92[ASN][1000 genomes]
rs35703530	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35905703	0.92[ASN][1000 genomes]
rs35929503	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4533591	0.91[ASN][1000 genomes]
rs4678468	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4678469	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67251788	0.93[ASN][1000 genomes]
rs6768570	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6788612	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6804250	0.91[ASN][1000 genomes]
rs9816663	0.90[ASN][1000 genomes]
rs9842247	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9858557	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34446800-34449400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:34447000-34449000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:34447200-34449200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:34447400-34449200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:34447400-34449200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:34447400-34449600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:34447600-34449000	Enhancers	Fetal Brain Male	brain
8	chr3:34447800-34449200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:34448000-34449400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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