Variant report

Variant	rs982479
Chromosome Location	chr6:150696948-150696949
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4869903	0.83[ASN][1000 genomes]
rs607232	0.81[ASN][1000 genomes]
rs608175	0.81[ASN][1000 genomes]
rs619252	0.81[ASN][1000 genomes]
rs620710	0.81[ASN][1000 genomes]
rs624510	0.81[ASN][1000 genomes]
rs625825	0.81[ASN][1000 genomes]
rs626249	0.81[ASN][1000 genomes]
rs640074	0.81[ASN][1000 genomes]
rs640943	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs671185	0.81[ASN][1000 genomes]
rs674026	0.81[ASN][1000 genomes]
rs685819	0.81[ASN][1000 genomes]
rs694489	0.81[ASN][1000 genomes]
rs7757225	0.81[ASN][1000 genomes]
rs7772011	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691000-150698200	Weak transcription	Stomach Mucosa	stomach
2	chr6:150691600-150700200	Weak transcription	Lung	lung
3	chr6:150692200-150698200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150693200-150698400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:150693400-150698000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:150693400-150698400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:150694000-150698200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:150694800-150698200	Weak transcription	Right Atrium	heart
9	chr6:150694800-150698400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:150694800-150698400	Weak transcription	Fetal Lung	lung
11	chr6:150695000-150697200	Weak transcription	Liver	Liver
12	chr6:150695000-150698200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:150695000-150698400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:150695200-150698400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:150695400-150698200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:150695400-150698600	Weak transcription	NHDF-Ad	bronchial
17	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:150696000-150698400	Weak transcription	Ovary	ovary
19	chr6:150696800-150699200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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