Variant report

Variant	rs9824856
Chromosome Location	chr3:113852731-113852732
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10049226	1.00[EUR][1000 genomes]
rs10934253	1.00[EUR][1000 genomes]
rs10934262	1.00[JPT][hapmap]
rs11921500	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11929108	0.85[EUR][1000 genomes]
rs12330143	1.00[EUR][1000 genomes]
rs12490922	0.90[AFR][1000 genomes]
rs12639482	1.00[MEX][hapmap]
rs1354348	1.00[JPT][hapmap]
rs1466578	1.00[EUR][1000 genomes]
rs1486008	1.00[JPT][hapmap]
rs16822393	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1800827	1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2251177	1.00[MEX][hapmap]
rs2654754	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2654762	1.00[MEX][hapmap]
rs2654763	1.00[JPT][hapmap]
rs28419745	1.00[EUR][1000 genomes]
rs324041	1.00[MEX][hapmap]
rs3732783	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3732791	1.00[JPT][hapmap]
rs4682534	1.00[JPT][hapmap]
rs57309847	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61595610	0.95[EUR][1000 genomes]
rs6786450	0.95[EUR][1000 genomes]
rs6806217	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6808291	1.00[EUR][1000 genomes]
rs72942687	1.00[EUR][1000 genomes]
rs72944698	0.95[EUR][1000 genomes]
rs7619130	0.95[EUR][1000 genomes]
rs7629948	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9288991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288992	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9288993	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9681085	1.00[EUR][1000 genomes]
rs9682405	1.00[EUR][1000 genomes]
rs9811326	0.95[EUR][1000 genomes]
rs9828046	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9837524	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871472	0.95[EUR][1000 genomes]
rs9873053	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9874427	0.95[EUR][1000 genomes]
rs9878569	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113852400-113852800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:113852600-113853000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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