Variant report

Variant	rs9825400
Chromosome Location	chr3:81912212-81912213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13314900	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1404296	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1851922	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851924	0.82[EUR][1000 genomes]
rs1973802	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2315967	0.80[EUR][1000 genomes]
rs2316043	0.82[EUR][1000 genomes]
rs2680275	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2680276	0.86[EUR][1000 genomes]
rs2691082	0.81[EUR][1000 genomes]
rs28553548	0.85[EUR][1000 genomes]
rs28668209	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3772886	0.86[EUR][1000 genomes]
rs57555994	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59419728	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62265681	0.92[EUR][1000 genomes]
rs62267115	0.87[EUR][1000 genomes]
rs62267150	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6548778	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6768673	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778413	0.82[EUR][1000 genomes]
rs6785740	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6791629	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6798822	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6804453	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6804613	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804697	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7611917	0.82[EUR][1000 genomes]
rs7633528	0.92[EUR][1000 genomes]
rs7634830	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7635332	0.81[EUR][1000 genomes]
rs7644425	0.82[EUR][1000 genomes]
rs9812141	0.82[EUR][1000 genomes]
rs9812505	0.82[EUR][1000 genomes]
rs9813371	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9816203	0.92[EUR][1000 genomes]
rs9820490	0.86[EUR][1000 genomes]
rs9826933	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9827558	0.82[EUR][1000 genomes]
rs9831301	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9831360	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9833851	0.92[EUR][1000 genomes]
rs9835279	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9838598	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9851559	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9863322	0.87[EUR][1000 genomes]
rs9870979	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874754	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv441830	chr3:81909338-81923746	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81909000-81913000	Weak transcription	Fetal Lung	lung
2	chr3:81909600-81912800	Weak transcription	HUVEC	blood vessel
3	chr3:81910400-81913000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:81910400-81915000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:81911000-81913000	Weak transcription	Fetal Heart	heart
6	chr3:81911000-81914200	Enhancers	Dnd41	blood
7	chr3:81911800-81913000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:81912200-81913800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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