Variant report

Variant	rs9825682
Chromosome Location	chr3:45955218-45955219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:45947295..45949529-chr3:45954537..45956111,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12330199	0.86[AFR][1000 genomes]
rs28670183	0.80[AFR][1000 genomes]
rs6805727	0.97[AFR][1000 genomes]
rs6806348	0.97[AFR][1000 genomes]
rs9814852	0.82[AFR][1000 genomes]
rs9825221	0.83[AFR][1000 genomes]
rs9825804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9833683	0.88[AFR][1000 genomes]
rs9840179	0.95[AFR][1000 genomes]
rs9860832	0.85[AFR][1000 genomes]
rs9865446	0.92[AFR][1000 genomes]
rs9875356	0.86[AFR][1000 genomes]
rs9880627	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45932400-45960200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:45934000-45960200	Weak transcription	Right Ventricle	heart
3	chr3:45940000-45959800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:45941400-45960000	Weak transcription	Adipose Nuclei	Adipose
5	chr3:45943000-45961000	Weak transcription	Brain Substantia Nigra	brain
6	chr3:45943600-45961200	Weak transcription	Gastric	stomach
7	chr3:45946200-45956800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:45946200-45960400	Weak transcription	Aorta	Aorta
9	chr3:45947000-45960200	Weak transcription	Lung	lung
10	chr3:45947800-45956800	Transcr. at gene 5' and 3'	Dnd41	blood
11	chr3:45948200-45961000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:45948400-45961600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:45948800-45960200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:45949200-45962400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:45949400-45958400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:45949800-45956800	Weak transcription	Small Intestine	intestine
17	chr3:45949800-45957400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:45949800-45962600	Weak transcription	HepG2	liver
19	chr3:45950000-45957600	Weak transcription	Esophagus	oesophagus
20	chr3:45950000-45960800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:45950200-45955400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:45950200-45957000	Weak transcription	HSMMtube	muscle
23	chr3:45950200-45957600	Weak transcription	Colonic Mucosa	Colon
24	chr3:45950200-45959800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:45950200-45960000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:45950200-45960400	Weak transcription	Pancreas	Pancrea
27	chr3:45950400-45957200	Weak transcription	Left Ventricle	heart
28	chr3:45950400-45958800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:45950600-45955600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:45950600-45956200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:45950600-45956200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:45950600-45956200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:45950600-45956200	Weak transcription	Spleen	Spleen
34	chr3:45950800-45955600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:45950800-45956200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:45950800-45958800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:45952200-45956400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr3:45952800-45956200	Weak transcription	Primary B cells from cord blood	blood
39	chr3:45952800-45963600	Weak transcription	Psoas Muscle	Psoas
40	chr3:45952800-45964600	Weak transcription	Fetal Heart	heart
41	chr3:45953000-45957400	Weak transcription	K562	blood
42	chr3:45953200-45959200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:45953200-45959600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr3:45953200-45960800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:45953400-45959800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:45953800-45956200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:45954200-45956200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:45954200-45956200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:45954200-45956400	Weak transcription	HSMM	muscle
50	chr3:45954400-45955600	Weak transcription	Primary T cells fromperipheralblood	blood

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