Variant report

Variant	rs9826933
Chromosome Location	chr3:81863230-81863231
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13314900	1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13322916	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13326721	1.00[JPT][hapmap]
rs1404296	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851922	0.83[EUR][1000 genomes]
rs1973802	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2315966	0.82[EUR][1000 genomes]
rs2315967	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2680275	0.81[EUR][1000 genomes]
rs2680276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2691081	0.82[EUR][1000 genomes]
rs28668209	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3772901	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3772911	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3849573	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57555994	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59419728	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62267115	0.82[EUR][1000 genomes]
rs62267150	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768673	0.83[EUR][1000 genomes]
rs6776410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6785740	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6791629	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798822	0.81[EUR][1000 genomes]
rs6804453	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804613	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6804697	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7623056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7634830	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9813371	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820490	0.81[EUR][1000 genomes]
rs9824576	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs9825400	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9831301	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831360	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9838598	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9847076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9847606	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9851559	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9863136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9863322	0.82[EUR][1000 genomes]
rs9870979	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9871474	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9874754	0.83[EUR][1000 genomes]
rs9881516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9883954	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3386842	chr3:81861512-81863610	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart
2	chr3:81859000-81864800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:81859200-81864000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:81860200-81865200	Weak transcription	Liver	Liver
5	chr3:81862000-81863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:81862800-81864600	Enhancers	Dnd41	blood

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