Variant report
| Variant | rs9830788 |
|---|---|
| Chromosome Location | chr3:115846078-115846079 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:115844845..115847305-chr3:115848813..115850468,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10212348 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10212349 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10212350 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10212351 | 1.00[EUR][1000 genomes] |
| rs11914439 | 1.00[EUR][1000 genomes] |
| rs11925181 | 1.00[EUR][1000 genomes] |
| rs11927187 | 1.00[EUR][1000 genomes] |
| rs13067904 | 1.00[EUR][1000 genomes] |
| rs13324181 | 1.00[EUR][1000 genomes] |
| rs1381071 | 1.00[EUR][1000 genomes] |
| rs1563936 | 1.00[EUR][1000 genomes] |
| rs1563939 | 1.00[EUR][1000 genomes] |
| rs16824706 | 1.00[EUR][1000 genomes] |
| rs1882011 | 1.00[EUR][1000 genomes] |
| rs1920361 | 1.00[EUR][1000 genomes] |
| rs28410403 | 1.00[EUR][1000 genomes] |
| rs35319164 | 1.00[EUR][1000 genomes] |
| rs4277686 | 1.00[EUR][1000 genomes] |
| rs59092560 | 1.00[EUR][1000 genomes] |
| rs59700272 | 1.00[EUR][1000 genomes] |
| rs6438298 | 1.00[MEX][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6768516 | 1.00[EUR][1000 genomes] |
| rs6781359 | 1.00[EUR][1000 genomes] |
| rs6782711 | 0.84[AMR][1000 genomes] |
| rs6791561 | 1.00[EUR][1000 genomes] |
| rs6796602 | 1.00[EUR][1000 genomes] |
| rs72947992 | 1.00[EUR][1000 genomes] |
| rs72959750 | 1.00[EUR][1000 genomes] |
| rs72959752 | 1.00[EUR][1000 genomes] |
| rs9283565 | 1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9289043 | 1.00[EUR][1000 genomes] |
| rs9289044 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9818490 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9835051 | 1.00[EUR][1000 genomes] |
| rs9856732 | 1.00[EUR][1000 genomes] |
| rs9856941 | 0.81[ASW][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012260 | chr3:115680931-115935968 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv2756413 | chr3:115721898-115908480 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2751975 | chr3:115766285-115902901 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2755046 | chr3:115818840-115942952 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv591345 | chr3:115819376-115902901 | Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv2752728 | chr3:115833212-115902901 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:115837600-115847400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr3:115843600-115848400 | Weak transcription | Brain Hippocampus Middle | brain |
| 3 | chr3:115846000-115851200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
