Variant report

Variant	rs9831921
Chromosome Location	chr3:23216324-23216325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10154847	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10510536	0.90[CHB][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs11916059	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11926494	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11927173	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13314285	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495130	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17012800	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17012829	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1908475	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2017065	0.81[CHB][hapmap];0.90[GIH][hapmap]
rs4078178	0.80[EUR][1000 genomes]
rs56223303	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58724157	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60782093	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61578857	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6765801	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6780569	0.81[EUR][1000 genomes]
rs6792370	0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7612463	0.89[CHB][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap]
rs7627380	0.81[CHB][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap]
rs7627761	0.86[AFR][1000 genomes]
rs9812056	0.85[ASN][1000 genomes]
rs9866739	0.82[ASN][1000 genomes]
rs9867046	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23215600-23216400	Enhancers	Fetal Muscle Leg	muscle
2	chr3:23215800-23216400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:23215800-23216400	Enhancers	Fetal Lung	lung
4	chr3:23216000-23216400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:23216000-23216400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:23216000-23216400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:23216000-23216400	Enhancers	Fetal Muscle Trunk	muscle
8	chr3:23216000-23216400	Enhancers	Gastric	stomach
9	chr3:23216000-23216400	Enhancers	Psoas Muscle	Psoas
10	chr3:23216000-23217800	Enhancers	HUVEC	blood vessel
11	chr3:23216200-23216400	Bivalent Enhancer	Small Intestine	intestine

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