Variant report
| Variant | rs9832088 |
|---|---|
| Chromosome Location | chr3:81834065-81834066 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12495343 | 0.88[EUR][1000 genomes] |
| rs12635671 | 0.88[EUR][1000 genomes] |
| rs1404297 | 0.82[EUR][1000 genomes] |
| rs1973800 | 0.82[EUR][1000 genomes] |
| rs1973801 | 0.82[EUR][1000 genomes] |
| rs1997002 | 0.82[EUR][1000 genomes] |
| rs2244294 | 0.82[EUR][1000 genomes] |
| rs2252530 | 0.81[EUR][1000 genomes] |
| rs2594558 | 0.86[EUR][1000 genomes] |
| rs2594562 | 0.87[EUR][1000 genomes] |
| rs2680245 | 0.85[EUR][1000 genomes] |
| rs2680246 | 0.85[EUR][1000 genomes] |
| rs2680260 | 0.84[EUR][1000 genomes] |
| rs2680274 | 0.84[EUR][1000 genomes] |
| rs2680277 | 0.87[EUR][1000 genomes] |
| rs2680280 | 0.82[EUR][1000 genomes] |
| rs2691077 | 0.83[EUR][1000 genomes] |
| rs2691078 | 0.83[EUR][1000 genomes] |
| rs2691079 | 0.83[EUR][1000 genomes] |
| rs2691080 | 0.83[EUR][1000 genomes] |
| rs2691083 | 0.83[EUR][1000 genomes] |
| rs2691084 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2691085 | 0.84[EUR][1000 genomes] |
| rs2691089 | 0.80[EUR][1000 genomes] |
| rs2691093 | 0.89[EUR][1000 genomes] |
| rs6803932 | 0.87[EUR][1000 genomes] |
| rs950904 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949545 | chr3:81523898-81893929 | Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv999992 | chr3:81693662-82015969 | Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv536605 | chr3:81693662-82015969 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:81834000-81834800 | Enhancers | Fetal Brain Male | brain |
