Variant report

Variant	rs9833022
Chromosome Location	chr3:136632122-136632123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10212476	0.90[AMR][1000 genomes]
rs13320485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73230079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9809686	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9826828	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136613200-136648800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:136613600-136633600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:136613600-136638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:136619200-136656800	Weak transcription	NHLF	lung
5	chr3:136622200-136633000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:136624200-136664400	Weak transcription	Aorta	Aorta
7	chr3:136624600-136637600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:136624600-136639800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:136626000-136633400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:136626000-136638400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:136626000-136646400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:136626000-136661600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:136626200-136633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:136626200-136633000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:136626200-136633200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:136626200-136640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:136626400-136633000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:136626400-136635600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:136626400-136636600	Weak transcription	Right Ventricle	heart
20	chr3:136626400-136637400	Weak transcription	Left Ventricle	heart
21	chr3:136626400-136646800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:136626400-136647000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:136626400-136648800	Weak transcription	HMEC	breast
24	chr3:136626400-136649200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:136626600-136632800	Weak transcription	K562	blood
26	chr3:136626600-136633600	Weak transcription	Spleen	Spleen
27	chr3:136626600-136636400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:136626600-136650600	Weak transcription	Esophagus	oesophagus
29	chr3:136626600-136661000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:136627600-136636000	Weak transcription	Psoas Muscle	Psoas
31	chr3:136628000-136637200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:136628000-136643600	Weak transcription	Small Intestine	intestine
33	chr3:136628200-136633000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:136628600-136633200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:136628800-136650600	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:136629200-136632400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:136629200-136634800	Weak transcription	Hela-S3	cervix
38	chr3:136629400-136635200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr3:136629400-136635800	Weak transcription	Primary T cells from cord blood	blood
40	chr3:136629600-136633800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:136630000-136633600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:136630400-136632600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr3:136630400-136633000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr3:136630600-136632200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr3:136630800-136635200	Weak transcription	HUVEC	blood vessel
46	chr3:136631000-136635000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:136631000-136636200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr3:136631200-136632200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:136631200-136632400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:136631200-136632600	Enhancers	HepG2	liver

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