Variant report

Variant	rs9834681
Chromosome Location	chr3:142880189-142880190
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55961427	0.96[EUR][1000 genomes]
rs9835120	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9843280	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1007164	chr3:142837004-142891719	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv508250	chr3:142842454-142943722	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv963582	chr3:142874090-142881230	Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv529013	chr3:142877227-142888043	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142873400-142881400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:142873400-142881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:142877400-142881200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:142877800-142884200	Weak transcription	Osteobl	bone
5	chr3:142877800-142886000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:142878000-142881600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:142878200-142884200	Weak transcription	NHDF-Ad	bronchial
8	chr3:142878800-142880400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:142879400-142881600	Weak transcription	K562	blood
10	chr3:142879400-142882000	Weak transcription	Fetal Lung	lung
11	chr3:142879400-142882000	Weak transcription	GM12878-XiMat	blood
12	chr3:142879600-142882400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:142879600-142882600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:142879600-142882600	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:142879600-142886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:142879800-142882000	Weak transcription	Dnd41	blood
17	chr3:142879800-142884000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:142880000-142882200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:142880000-142882400	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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