Variant report

Variant	rs9835279
Chromosome Location	chr3:81943796-81943797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13313910	0.84[ASN][1000 genomes]
rs13314900	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs13327783	0.84[ASN][1000 genomes]
rs17479347	0.90[ASN][1000 genomes]
rs1851922	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1851924	0.86[EUR][1000 genomes]
rs1973802	0.86[EUR][1000 genomes]
rs2316043	0.86[EUR][1000 genomes]
rs2680275	0.84[EUR][1000 genomes]
rs2680276	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs34665337	0.87[ASN][1000 genomes]
rs3772886	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3849573	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs57555994	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59419728	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62265681	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62265683	0.90[ASN][1000 genomes]
rs62265684	0.84[ASN][1000 genomes]
rs62265686	0.87[ASN][1000 genomes]
rs62267150	0.85[EUR][1000 genomes]
rs6548778	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6768673	0.86[EUR][1000 genomes]
rs6776410	0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6778413	0.86[EUR][1000 genomes]
rs6785740	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6787635	0.90[ASN][1000 genomes]
rs6791629	0.86[EUR][1000 genomes]
rs6798822	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6804613	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6804697	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7611917	0.86[EUR][1000 genomes]
rs7623056	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7633528	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634830	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7635332	0.84[EUR][1000 genomes]
rs7644425	0.86[EUR][1000 genomes]
rs9812141	0.86[EUR][1000 genomes]
rs9812505	0.86[EUR][1000 genomes]
rs9813371	0.87[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs9816203	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9825400	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9827558	0.86[EUR][1000 genomes]
rs9831301	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9831360	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9833851	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838598	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9847076	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9851559	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9870979	0.85[EUR][1000 genomes]
rs9871474	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9874754	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9985397	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81943600-81943800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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