Variant report

Variant	rs9836135
Chromosome Location	chr3:23317674-23317675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs11707094	0.84[ASN][1000 genomes]
rs11707450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[ASN][1000 genomes]
rs11708040	0.91[ASN][1000 genomes]
rs11711630	0.83[EUR][1000 genomes]
rs11712500	0.89[ASN][1000 genomes]
rs11712582	0.89[ASN][1000 genomes]
rs11713392	0.91[ASN][1000 genomes]
rs11715035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[ASN][1000 genomes]
rs11715107	0.88[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13087416	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13095887	0.80[AFR][1000 genomes]
rs1390083	0.84[CEU][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1495133	0.88[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1495134	0.83[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs1552931	0.80[AFR][1000 genomes]
rs1692619	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs1695180	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs17342342	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17342980	0.91[ASN][1000 genomes]
rs17401836	0.91[ASN][1000 genomes]
rs17402378	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[ASN][1000 genomes]
rs1874234	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs1874502	1.00[CHB][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs1874503	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.94[ASN][1000 genomes]
rs1994953	0.95[ASN][1000 genomes]
rs2036044	1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs2036045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2047339	0.81[ASN][1000 genomes]
rs2047340	0.88[CEU][hapmap]
rs2055155	0.85[YRI][hapmap]
rs2055156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[ASN][1000 genomes]
rs2055157	0.84[ASN][1000 genomes]
rs2088129	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2101811	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs2132144	0.94[ASN][1000 genomes]
rs2132145	0.88[CEU][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs2132146	0.90[ASN][1000 genomes]
rs2132147	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs2132148	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2132149	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2173057	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2201484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs2359754	1.00[ASN][1000 genomes]
rs2359755	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2359761	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs35194124	0.91[ASN][1000 genomes]
rs35613382	0.93[ASN][1000 genomes]
rs36073188	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4858063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[ASN][1000 genomes]
rs4858065	0.81[EUR][1000 genomes]
rs4858066	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4858068	0.86[ASN][1000 genomes]
rs4858070	1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs4858487	0.93[ASN][1000 genomes]
rs4858488	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4858489	1.00[ASN][1000 genomes]
rs4858490	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs4858495	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.94[ASN][1000 genomes]
rs4858498	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4858499	0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs4858507	1.00[CHB][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs5023615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs59185768	0.91[ASN][1000 genomes]
rs62252657	0.82[ASN][1000 genomes]
rs62255292	0.93[ASN][1000 genomes]
rs62255293	0.87[ASN][1000 genomes]
rs6550759	0.84[ASN][1000 genomes]
rs6550760	1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs6765758	0.90[ASN][1000 genomes]
rs6769959	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6774214	0.85[ASN][1000 genomes]
rs6780388	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6790185	0.84[CEU][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6790327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs6801824	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs6806387	0.88[CEU][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73149661	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7618910	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7621680	0.97[ASN][1000 genomes]
rs7629327	0.93[YRI][hapmap]
rs7635882	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7637485	0.84[ASN][1000 genomes]
rs7643705	1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs7648425	0.85[YRI][hapmap]
rs7653868	0.95[ASN][1000 genomes]
rs778458	0.83[ASN][1000 genomes]
rs778463	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs778483	0.83[JPT][hapmap]
rs778492	0.83[JPT][hapmap]
rs778493	0.88[CEU][hapmap]
rs778497	0.91[YRI][hapmap]
rs903519	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs903520	0.91[ASN][1000 genomes]
rs923996	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs931609	1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs9757330	1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs9758590	1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs9815299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[ASN][1000 genomes]
rs9823684	1.00[ASN][1000 genomes]
rs9826103	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9840015	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9840808	0.94[ASN][1000 genomes]
rs9841336	1.00[ASN][1000 genomes]
rs9844558	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9848331	0.85[YRI][hapmap]
rs9848389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs9849679	0.94[ASN][1000 genomes]
rs9863465	1.00[ASN][1000 genomes]
rs9875910	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23295200-23321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
3	chr3:23302400-23321000	Weak transcription	Pancreas	Pancrea
4	chr3:23305600-23318400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:23314400-23319400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:23314400-23330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:23314600-23318600	Weak transcription	Fetal Kidney	kidney
8	chr3:23315400-23321800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:23315800-23318400	Weak transcription	A549	lung
10	chr3:23315800-23320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:23316800-23328000	Weak transcription	Primary B cells from cord blood	blood
12	chr3:23317000-23320600	Weak transcription	Brain Angular Gyrus	brain
13	chr3:23317000-23320800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:23317000-23324400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:23317400-23318600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:23317600-23318800	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:23317600-23324800	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links