Variant report

Variant	rs983766
Chromosome Location	chr14:33099157-33099158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33081326..33083127-chr14:33096469..33099467,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10129321	0.81[CEU][hapmap]
rs10139885	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140278	0.81[CEU][hapmap]
rs10143113	0.84[CEU][hapmap]
rs11626506	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627076	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11627566	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11627900	0.84[CEU][hapmap]
rs12147120	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586675	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12586676	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12888621	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1956201	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1956220	0.95[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1956223	0.80[CHB][hapmap]
rs2180449	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7152377	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7153041	0.95[CEU][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154943	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7159519	0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7160301	0.84[CEU][hapmap]
rs8016257	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8021432	0.95[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
3	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:33089600-33102600	Weak transcription	Psoas Muscle	Psoas
5	chr14:33092400-33102800	Weak transcription	Right Ventricle	heart
6	chr14:33093200-33102800	Weak transcription	Left Ventricle	heart
7	chr14:33093200-33103600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:33093200-33104200	Weak transcription	HSMM	muscle
9	chr14:33093800-33104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:33094000-33102400	Weak transcription	NHDF-Ad	bronchial
11	chr14:33096200-33102800	Weak transcription	HSMMtube	muscle
12	chr14:33096800-33102400	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:33096800-33105400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:33097200-33101800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:33097400-33101000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:33097800-33099400	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:33098000-33100800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:33098000-33104200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr14:33098200-33099200	Enhancers	Brain Germinal Matrix	brain
20	chr14:33098200-33099200	Enhancers	Brain Substantia Nigra	brain
21	chr14:33098200-33099200	Enhancers	Fetal Muscle Leg	muscle
22	chr14:33098600-33100600	Weak transcription	Fetal Heart	heart
23	chr14:33098800-33102600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:33098800-33102600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:33098800-33104200	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links