Variant report

Variant	rs9841087
Chromosome Location	chr3:81907949-81907950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11127740	0.81[CEU][hapmap]
rs11711024	0.87[EUR][1000 genomes]
rs11711331	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs12152272	0.87[EUR][1000 genomes]
rs12495343	0.84[ASN][1000 genomes]
rs12635671	0.82[ASN][1000 genomes]
rs13062741	0.84[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs13072957	0.80[CEU][hapmap]
rs13073613	0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs13075250	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13079104	0.84[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13091492	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13099615	0.81[CEU][hapmap]
rs1464790	0.84[CEU][hapmap]
rs1464791	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1524557	0.86[EUR][1000 genomes]
rs1851930	0.81[EUR][1000 genomes]
rs2053805	0.80[CEU][hapmap]
rs2691093	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2873054	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3772882	0.92[CEU][hapmap]
rs3772883	0.92[CEU][hapmap]
rs3772884	0.80[CEU][hapmap]
rs3772896	0.92[CEU][hapmap];0.87[JPT][hapmap]
rs3821548	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs3821551	0.81[CEU][hapmap]
rs3849570	0.96[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs3849571	0.92[CEU][hapmap];0.87[JPT][hapmap]
rs3860595	0.92[CEU][hapmap]
rs3943556	0.81[CEU][hapmap]
rs4411908	0.92[CEU][hapmap]
rs6765917	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7620240	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs7634258	0.80[CEU][hapmap]
rs7641973	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7648245	0.87[EUR][1000 genomes]
rs9820349	0.81[AMR][1000 genomes]
rs9854004	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2453055	chr3:81906123-81907991	Weak transcription Enhancers	lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3434713	chr3:81906712-81908810	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv6487	chr3:81907260-81908057	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv2022920	chr3:81907326-81907992	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv2018755	chr3:81907456-81908016	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9841087	GBE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81907200-81910000	Weak transcription	Fetal Heart	heart

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