Variant report

Variant	rs9842014
Chromosome Location	chr3:23288877-23288878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11129112	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11129114	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11921580	0.81[ASN][1000 genomes]
rs11928344	0.80[ASN][1000 genomes]
rs12636682	0.80[ASN][1000 genomes]
rs1495135	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17341838	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17343818	0.80[ASN][1000 genomes]
rs17403650	0.81[ASN][1000 genomes]
rs2172827	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2359637	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2359638	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28370926	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2884787	0.83[AFR][1000 genomes]
rs4368441	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs55895449	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57055494	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57624654	0.80[ASN][1000 genomes]
rs57869672	0.81[ASN][1000 genomes]
rs6762615	0.80[ASN][1000 genomes]
rs6766166	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6771053	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6771206	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6773311	0.80[AFR][1000 genomes]
rs6797467	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73033545	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73033551	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7428484	0.80[ASN][1000 genomes]
rs7610971	0.81[ASN][1000 genomes]
rs7613969	0.80[ASN][1000 genomes]
rs7614926	0.80[ASN][1000 genomes]
rs7622913	0.80[ASN][1000 genomes]
rs7632520	0.80[ASN][1000 genomes]
rs7636536	0.82[ASN][1000 genomes]
rs7638278	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7638405	0.80[ASN][1000 genomes]
rs7641764	0.80[ASN][1000 genomes]
rs7646505	0.80[ASN][1000 genomes]
rs7651175	0.80[ASN][1000 genomes]
rs903518	0.80[ASN][1000 genomes]
rs9814419	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9825835	0.82[ASN][1000 genomes]
rs9835256	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9839409	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9841308	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9841518	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9844723	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9845536	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9881808	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9882514	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23274800-23298200	Weak transcription	Aorta	Aorta
2	chr3:23278600-23289600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:23280200-23291400	Weak transcription	Psoas Muscle	Psoas
4	chr3:23280400-23290600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:23281400-23298200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:23282000-23290200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:23282200-23289000	Weak transcription	Adipose Nuclei	Adipose
8	chr3:23282200-23294600	Weak transcription	A549	lung
9	chr3:23283200-23296000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:23283600-23302200	Weak transcription	Left Ventricle	heart
11	chr3:23283800-23292000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:23285000-23290000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:23285000-23292400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:23286400-23289600	Weak transcription	Brain Angular Gyrus	brain
15	chr3:23286600-23289000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:23286600-23289600	Weak transcription	Brain Substantia Nigra	brain
17	chr3:23286800-23289400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:23286800-23289600	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:23288600-23289200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:23288600-23289800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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