Variant report

Variant	rs9842812
Chromosome Location	chr3:142781665-142781666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142781075..142783865-chr3:142785035..142788553,3	K562	blood:
2	chr3:142781075..142783865-chr3:142785035..142787679,2	K562	blood:
3	chr3:142742616..142744356-chr3:142781351..142784020,2	K562	blood:
4	chr3:142771385..142780409-chr3:142780501..142789449,10	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1107771	1.00[EUR][1000 genomes]
rs12107010	0.87[ASN][1000 genomes]
rs13321817	0.87[ASN][1000 genomes]
rs13322379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs13322528	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs13325630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16852899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16852993	1.00[CEU][hapmap]
rs3821646	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58531834	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59540153	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764683	0.86[EUR][1000 genomes]
rs6768278	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs6771415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781061	0.83[ASN][1000 genomes]
rs6782124	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6797880	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805721	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806835	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72990813	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992541	0.87[ASN][1000 genomes]
rs72992555	0.86[EUR][1000 genomes]
rs7646915	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9289653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808897	0.87[ASN][1000 genomes]
rs9808965	0.87[ASN][1000 genomes]
rs9820824	0.87[ASN][1000 genomes]
rs9839114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871843	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876889	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877143	0.86[EUR][1000 genomes]
rs9881229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9881390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883936	0.87[ASN][1000 genomes]
rs9990198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1004467	chr3:142768867-142800605	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1004682	chr3:142768867-142804154	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142729200-142785200	Weak transcription	Aorta	Aorta
2	chr3:142734400-142785200	Weak transcription	Esophagus	oesophagus
3	chr3:142749000-142784200	Weak transcription	Small Intestine	intestine
4	chr3:142763400-142787000	Weak transcription	Spleen	Spleen
5	chr3:142764200-142784200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:142765000-142782200	Weak transcription	Fetal Heart	heart
7	chr3:142765400-142791600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:142767400-142786600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:142769200-142782800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:142769600-142789000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:142770400-142787000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:142771200-142781800	Weak transcription	Lung	lung
13	chr3:142771200-142790000	Weak transcription	Pancreas	Pancrea
14	chr3:142771400-142786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:142771600-142786600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:142772200-142784800	Weak transcription	Fetal Stomach	stomach
17	chr3:142773000-142783200	Weak transcription	Fetal Intestine Small	intestine
18	chr3:142773000-142783400	Weak transcription	Colonic Mucosa	Colon
19	chr3:142773000-142783400	Weak transcription	Left Ventricle	heart
20	chr3:142773000-142783400	Weak transcription	Thymus	Thymus
21	chr3:142773000-142790200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:142773400-142785200	Weak transcription	Fetal Kidney	kidney
23	chr3:142773400-142788800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:142774000-142781800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:142774000-142785200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:142774000-142785800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:142774200-142782000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:142774200-142784200	Weak transcription	Ovary	ovary
29	chr3:142774200-142789400	Weak transcription	NHLF	lung
30	chr3:142774400-142785200	Weak transcription	Fetal Brain Female	brain
31	chr3:142775000-142786400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:142775200-142781800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:142775200-142789200	Weak transcription	NHDF-Ad	bronchial
34	chr3:142775400-142781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:142775400-142781800	Weak transcription	Fetal Lung	lung
36	chr3:142775400-142782000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr3:142775400-142782000	Weak transcription	Brain Anterior Caudate	brain
38	chr3:142775400-142783000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:142775400-142786000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:142775400-142786200	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:142775400-142786600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr3:142775400-142789200	Weak transcription	Primary T cells from cord blood	blood
43	chr3:142775400-142789400	Weak transcription	HSMMtube	muscle
44	chr3:142775600-142786800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr3:142775600-142794400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:142776000-142781800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:142776000-142782200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr3:142776000-142783000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr3:142776000-142783400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:142776000-142783400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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