Variant report

Variant	rs9844223
Chromosome Location	chr3:119488986-119488987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13316467	0.90[AFR][1000 genomes]
rs13316524	0.90[AFR][1000 genomes]
rs13318819	0.95[AFR][1000 genomes]
rs28370398	0.90[AFR][1000 genomes]
rs28415065	0.90[AFR][1000 genomes]
rs28464044	0.90[AFR][1000 genomes]
rs28484588	0.90[AFR][1000 genomes]
rs28595123	0.90[AFR][1000 genomes]
rs28678836	0.90[AFR][1000 genomes]
rs6795467	0.90[AFR][1000 genomes]
rs7617259	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7618191	1.00[AFR][1000 genomes]
rs9289133	0.90[AFR][1000 genomes]
rs9810454	0.90[AFR][1000 genomes]
rs9811271	0.90[AFR][1000 genomes]
rs9813490	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9814138	0.90[AFR][1000 genomes]
rs9815987	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9817771	0.90[AFR][1000 genomes]
rs9819218	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9820811	0.90[AFR][1000 genomes]
rs9824097	0.90[AFR][1000 genomes]
rs9834015	1.00[AFR][1000 genomes]
rs9835381	0.90[AFR][1000 genomes]
rs9837808	0.90[AFR][1000 genomes]
rs9842101	0.90[AFR][1000 genomes]
rs9844543	1.00[AFR][1000 genomes]
rs9847782	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9851058	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9853426	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9856637	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9858328	0.90[AFR][1000 genomes]
rs9859568	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9860171	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9864160	0.85[AFR][1000 genomes]
rs9865259	0.90[AFR][1000 genomes]
rs9866905	0.90[AFR][1000 genomes]
rs9870607	0.90[AFR][1000 genomes]
rs9875512	0.90[AFR][1000 genomes]
rs9881432	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119474400-119493400	Weak transcription	Ovary	ovary
2	chr3:119487800-119489000	Enhancers	Stomach Mucosa	stomach
3	chr3:119487800-119489200	Enhancers	Osteobl	bone
4	chr3:119488600-119489600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:119488600-119489800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:119488600-119490400	Enhancers	HUVEC	blood vessel
7	chr3:119488600-119495400	Weak transcription	HSMM	muscle
8	chr3:119488800-119489200	Weak transcription	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links