Variant report

Variant	rs9844994
Chromosome Location	chr3:54163346-54163347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12715465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13319005	1.00[AMR][1000 genomes]
rs13322337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409957	1.00[AMR][1000 genomes]
rs28560392	1.00[AMR][1000 genomes]
rs6782007	1.00[AMR][1000 genomes]
rs9809130	1.00[AMR][1000 genomes]
rs9814675	1.00[AMR][1000 genomes]
rs9816122	1.00[AMR][1000 genomes]
rs9818571	1.00[AMR][1000 genomes]
rs9823141	1.00[AMR][1000 genomes]
rs9828425	1.00[AMR][1000 genomes]
rs9830052	1.00[AMR][1000 genomes]
rs9836647	1.00[EUR][1000 genomes]
rs9836702	1.00[AMR][1000 genomes]
rs9844238	1.00[AMR][1000 genomes]
rs9845702	1.00[AMR][1000 genomes]
rs9858447	1.00[AMR][1000 genomes]
rs9861078	1.00[EUR][1000 genomes]
rs9861079	1.00[AMR][1000 genomes]
rs9863977	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54158000-54165200	Weak transcription	Gastric	stomach
2	chr3:54158200-54165000	Weak transcription	Psoas Muscle	Psoas
3	chr3:54158200-54165000	Weak transcription	Right Atrium	heart
4	chr3:54158200-54176200	Weak transcription	Ovary	ovary
5	chr3:54158400-54163600	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:54158400-54163600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:54159600-54163600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:54159800-54180400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:54160000-54168800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:54160000-54180200	Weak transcription	Hela-S3	cervix
11	chr3:54161800-54165800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:54162000-54165800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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