Variant report

Variant	rs9845203
Chromosome Location	chr3:116037190-116037191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1541871	1.00[CHB][hapmap]
rs1619655	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs17646258	1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1835674	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1920185	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1920189	0.91[EUR][1000 genomes]
rs2163504	1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs28504104	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4521220	0.90[EUR][1000 genomes]
rs6785974	0.94[EUR][1000 genomes]
rs724115	1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs7627104	1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs7648197	1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs9852860	1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9856796	0.95[EUR][1000 genomes]
rs988803	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116026200-116037200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:116028200-116037400	Weak transcription	Brain Germinal Matrix	brain
3	chr3:116032400-116037200	Weak transcription	Brain Angular Gyrus	brain
4	chr3:116032400-116038200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:116032600-116037200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:116032600-116040000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:116034200-116037200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:116034200-116037600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:116034200-116038000	Weak transcription	Brain Anterior Caudate	brain
10	chr3:116034400-116038000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:116034600-116037200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:116036200-116041400	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:116037000-116037200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:116037000-116037400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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