Variant report

Variant	rs984645
Chromosome Location	chr5:92719442-92719443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10064251	0.92[ASN][1000 genomes]
rs10072317	0.92[ASN][1000 genomes]
rs10463227	0.83[ASN][1000 genomes]
rs11135387	0.83[ASN][1000 genomes]
rs12152903	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs187931	0.95[ASN][1000 genomes]
rs2343708	0.84[ASN][1000 genomes]
rs269696	0.93[ASN][1000 genomes]
rs269700	0.97[ASN][1000 genomes]
rs269701	0.94[ASN][1000 genomes]
rs269702	0.93[ASN][1000 genomes]
rs269703	0.95[ASN][1000 genomes]
rs269704	0.86[ASN][1000 genomes]
rs269705	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs269706	0.94[ASN][1000 genomes]
rs269707	0.94[ASN][1000 genomes]
rs4869195	0.83[ASN][1000 genomes]
rs6420123	0.98[ASN][1000 genomes]
rs898597	0.95[ASN][1000 genomes]
rs9314085	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92717600-92723800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:92718000-92720400	Enhancers	Fetal Lung	lung
3	chr5:92718800-92721200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:92719000-92721000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:92719000-92721000	Weak transcription	Fetal Kidney	kidney
6	chr5:92719000-92730400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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