Variant report

Variant	rs9848655
Chromosome Location	chr3:138108352-138108353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138108024..138110952-chr3:138113271..138115084,3	MCF-7	breast:
2	chr3:138108137..138110673-chr3:138113889..138116211,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10513053	0.88[JPT][hapmap]
rs1199337	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1199338	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12695685	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074317	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13079209	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13080413	1.00[ASN][1000 genomes]
rs13083299	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096934	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13324341	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs185244	0.86[EUR][1000 genomes]
rs2279241	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291127	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293251	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306374	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2347252	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34078858	0.84[ASN][1000 genomes]
rs34140440	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34568901	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34905952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3732837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773750	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59217491	0.84[ASN][1000 genomes]
rs6807945	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs9818870	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828345	1.00[JPT][hapmap]
rs9851766	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864898	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872754	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv528349	chr3:138025396-138132393	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1796956	chr3:138051423-138122781	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1848610	chr3:138051423-138133412	Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1797142	chr3:138087467-138122781	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1845560	chr3:138087467-138133412	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3447663	chr3:138096329-138273034	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv460864	chr3:138100539-138194435	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv591853	chr3:138100539-138194435	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv526089	chr3:138106698-138122781	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9848655	MRAS	cis	Artery Aorta	GTEx

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138090400-138119400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:138097600-138116000	Weak transcription	Aorta	Aorta
3	chr3:138097600-138116600	Weak transcription	Brain Germinal Matrix	brain
4	chr3:138101200-138115000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:138101400-138108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:138101400-138123000	Weak transcription	Fetal Lung	lung
7	chr3:138101600-138120400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:138101800-138108400	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:138101800-138108400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:138101800-138108600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:138102600-138109200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:138103400-138108600	Weak transcription	NHEK	skin
13	chr3:138103800-138108600	Weak transcription	Brain Angular Gyrus	brain
14	chr3:138103800-138109200	Weak transcription	Brain Substantia Nigra	brain
15	chr3:138105200-138109000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:138105400-138108400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:138106000-138108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:138106000-138109400	Enhancers	Left Ventricle	heart
19	chr3:138106200-138108800	Weak transcription	Fetal Stomach	stomach
20	chr3:138106200-138109800	Enhancers	Adipose Nuclei	Adipose
21	chr3:138107000-138108400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:138107200-138108600	Weak transcription	Fetal Brain Female	brain
23	chr3:138107400-138109800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:138107600-138109600	Enhancers	Brain Anterior Caudate	brain
25	chr3:138107600-138112000	Enhancers	Fetal Heart	heart
26	chr3:138107800-138108600	Enhancers	Osteobl	bone
27	chr3:138107800-138109200	Enhancers	Right Ventricle	heart
28	chr3:138107800-138110200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:138108000-138108400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:138108000-138108400	Enhancers	HSMM	muscle
31	chr3:138108000-138108400	Genic enhancers	HSMMtube	muscle
32	chr3:138108000-138108600	Enhancers	Muscle Satellite Cultured Cells	--
33	chr3:138108000-138108600	Enhancers	NH-A	brain
34	chr3:138108000-138108800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:138108000-138108800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:138108000-138109000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:138108000-138109000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr3:138108000-138109200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr3:138108000-138109400	Enhancers	Brain Hippocampus Middle	brain
40	chr3:138108000-138109400	Enhancers	Right Atrium	heart
41	chr3:138108000-138109600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr3:138108000-138109600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:138108000-138109600	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:138108000-138109600	Enhancers	Colon Smooth Muscle	Colon
45	chr3:138108000-138109600	Enhancers	Ovary	ovary
46	chr3:138108000-138109600	Enhancers	Psoas Muscle	Psoas
47	chr3:138108000-138109800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:138108000-138109800	Enhancers	Placenta	Placenta
49	chr3:138108000-138115800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr3:138108200-138108600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links