Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:45805606-45805942	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr10:45805609-45805928	GM12878	blood:	n/a	n/a
3	RAD21	chr10:45805636-45805890	GM12878	blood:	n/a	n/a
4	CTCF	chr10:45805638-45805915	K562	blood:	n/a	n/a
5	CTCF	chr10:45805640-45805790	GM12865	blood:	n/a	n/a
6	EP300	chr10:45805682-45805769	GM12878	blood:	n/a	n/a
7	RAD21	chr10:45805653-45805891	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr10:45805680-45805830	GM12872	blood:	n/a	n/a
9	RAD21	chr10:45805638-45805908	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
OR13A1	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11239419	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239421	0.97[ASN][1000 genomes]
rs12266548	0.91[ASN][1000 genomes]
rs12765621	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1578206	0.89[ASN][1000 genomes]
rs1583420	0.97[ASN][1000 genomes]
rs1583421	0.97[ASN][1000 genomes]
rs1836468	0.97[ASN][1000 genomes]
rs1836469	0.97[ASN][1000 genomes]
rs1836470	0.97[ASN][1000 genomes]
rs1856593	0.85[ASN][1000 genomes]
rs1856594	0.83[ASN][1000 genomes]
rs1988025	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948663	0.96[ASN][1000 genomes]
rs4948669	0.96[ASN][1000 genomes]
rs4948670	0.97[ASN][1000 genomes]
rs4948987	0.97[ASN][1000 genomes]
rs4948988	0.97[ASN][1000 genomes]
rs6593477	0.97[ASN][1000 genomes]
rs7071166	0.82[ASN][1000 genomes]
rs7097007	0.97[ASN][1000 genomes]
rs7912175	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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