Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1002489	0.92[ASN][1000 genomes]
rs12494669	0.86[ASN][1000 genomes]
rs12495732	0.92[ASN][1000 genomes]
rs13062392	0.92[ASN][1000 genomes]
rs1440382	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1440387	0.81[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs1561594	0.86[ASN][1000 genomes]
rs1583821	0.87[ASN][1000 genomes]
rs1899082	0.88[ASN][1000 genomes]
rs2099753	0.92[ASN][1000 genomes]
rs2218183	0.92[ASN][1000 genomes]
rs4044970	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4678651	0.95[ASN][1000 genomes]
rs7614971	0.84[AMR][1000 genomes]
rs7630218	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7631478	0.94[ASN][1000 genomes]
rs7633784	0.95[ASN][1000 genomes]
rs7641622	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7643151	0.93[ASN][1000 genomes]
rs893923	0.93[ASN][1000 genomes]
rs9835388	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3525372	chr3:34118598-34121396	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3525376	chr3:34118998-34121296	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv3464237	chr3:34119596-34120451	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3525371	chr3:34119622-34120420	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3525374	chr3:34119629-34120440	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3525375	chr3:34119686-34120377	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv19091	chr3:34119735-34120333	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3464238	chr3:34119743-34120333	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	esv3525377	chr3:34119743-34120333	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34115800-34120200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:34115800-34120400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:34116000-34120200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:34119000-34120200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:34119000-34120600	Enhancers	Fetal Brain Male	brain
6	chr3:34119200-34120400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:34119400-34120400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:34119600-34120600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:34119800-34120400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:34119800-34120600	Enhancers	GM12878-XiMat	blood
11	chr3:34120000-34120200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:34120000-34120200	Enhancers	Fetal Brain Female	brain
13	chr3:34120000-34120400	Enhancers	Brain Germinal Matrix	brain

Quick Search: