Variant report

Variant	rs9854004
Chromosome Location	chr3:81958242-81958243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10779986	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11127746	0.82[ASN][1000 genomes]
rs11705789	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13068700	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1464791	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2873054	0.82[AMR][1000 genomes]
rs4479620	0.87[EUR][1000 genomes]
rs4605572	0.85[EUR][1000 genomes]
rs4618242	0.86[EUR][1000 genomes]
rs4622918	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6548779	0.80[EUR][1000 genomes]
rs6765917	0.82[AMR][1000 genomes]
rs7641973	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9810377	0.84[ASN][1000 genomes]
rs9820349	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841087	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9854004	GBE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81953600-81959000	Weak transcription	Psoas Muscle	Psoas
2	chr3:81958000-81963200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:81958200-81959400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:81958200-81960000	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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