Variant report

Variant	rs9855093
Chromosome Location	chr3:119248321-119248322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1131265	0.94[YRI][hapmap]
rs12695388	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075568	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1523311	0.92[ASN][1000 genomes]
rs2293370	0.95[YRI][hapmap]
rs2629396	0.92[ASN][1000 genomes]
rs4688014	0.91[AFR][1000 genomes]
rs6805225	0.90[ASN][1000 genomes]
rs7611041	0.93[ASN][1000 genomes]
rs7615155	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869760	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119228000-119250000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:119231800-119257200	Strong transcription	GM12878-XiMat	blood
3	chr3:119237800-119251400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:119237800-119255800	Weak transcription	Spleen	Spleen
5	chr3:119238000-119248400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:119238200-119249000	Weak transcription	NHLF	lung
7	chr3:119239600-119248400	Weak transcription	HSMMtube	muscle
8	chr3:119239600-119253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:119239800-119252400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:119240200-119248600	Weak transcription	Fetal Brain Male	brain
11	chr3:119240600-119249400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:119243000-119248600	Weak transcription	NHDF-Ad	bronchial
13	chr3:119243200-119251400	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:119243400-119248400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:119243600-119249400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:119243600-119250800	Weak transcription	Brain Anterior Caudate	brain
17	chr3:119243800-119248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:119244200-119253400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:119244400-119248400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:119244400-119248400	Weak transcription	Osteobl	bone
21	chr3:119244600-119248400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:119244600-119248400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:119244600-119248600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:119244600-119253200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:119244800-119253400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:119244800-119257200	Weak transcription	Primary B cells from cord blood	blood
27	chr3:119245200-119248400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:119245200-119248400	Weak transcription	Fetal Lung	lung
29	chr3:119245200-119248600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:119245200-119248600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:119245200-119276600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:119245400-119253400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:119247400-119248600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr3:119247400-119250800	Weak transcription	Primary T cells from cord blood	blood
35	chr3:119248200-119248600	Enhancers	HMEC	breast
36	chr3:119248200-119249600	Enhancers	HSMM	muscle

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