Variant report

Variant	rs9855749
Chromosome Location	chr3:42821509-42821510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:42814737..42816425-chr3:42820280..42821787,2	MCF-7	breast:
2	chr3:42817338..42819840-chr3:42820314..42822422,2	MCF-7	breast:
3	chr3:42820881..42822515-chr3:42843907..42845636,2	K562	blood:
4	chr3:42821054..42822570-chr3:42908126..42910033,2	K562	blood:
5	chr3:42821025..42823114-chr3:42833487..42836032,2	MCF-7	breast:
6	chr3:42817217..42818937-chr3:42821351..42822970,2	K562	blood:
7	chr3:42819275..42824150-chr3:42869754..42873104,6	MCF-7	breast:
8	chr3:42821500..42822997-chr3:42871419..42873013,19	K562	blood:
9	chr3:42820953..42824187-chr3:42845288..42847864,3	MCF-7	breast:
10	chr3:42820160..42826427-chr3:42842009..42849039,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000144648	Chromatin interaction
ENSG00000181061	Chromatin interaction
ENSG00000244607	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13433851	0.85[AFR][1000 genomes]
rs13433945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55914160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814373	0.82[AFR][1000 genomes]
rs9831582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9849297	0.82[AFR][1000 genomes]
rs9851661	0.82[AFR][1000 genomes]
rs9866372	0.82[AFR][1000 genomes]
rs9877459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9879906	0.82[AFR][1000 genomes]
rs9881713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846968	chr3:42787469-42832979	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42813000-42821800	Weak transcription	HepG2	liver
2	chr3:42814600-42822200	Weak transcription	Fetal Heart	heart
3	chr3:42814800-42823800	Weak transcription	Lung	lung
4	chr3:42814800-42824800	Weak transcription	Gastric	stomach
5	chr3:42814800-42840800	Weak transcription	Spleen	Spleen
6	chr3:42815000-42823200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:42815000-42824800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:42815000-42834800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:42815200-42821600	Weak transcription	Stomach Mucosa	stomach
10	chr3:42815200-42821600	Weak transcription	K562	blood
11	chr3:42815200-42821800	Weak transcription	Fetal Kidney	kidney
12	chr3:42815200-42822200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:42815200-42822200	Weak transcription	Brain Angular Gyrus	brain
14	chr3:42815200-42822600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:42815200-42822600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:42815200-42822600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:42815200-42822800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:42815200-42823000	Weak transcription	Colonic Mucosa	Colon
19	chr3:42815200-42823600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:42815200-42823600	Weak transcription	Placenta	Placenta
21	chr3:42815200-42823800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:42815200-42823800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:42815200-42823800	Weak transcription	Fetal Brain Female	brain
24	chr3:42815200-42823800	Weak transcription	Left Ventricle	heart
25	chr3:42815200-42823800	Weak transcription	GM12878-XiMat	blood
26	chr3:42815200-42823800	Weak transcription	HMEC	breast
27	chr3:42815200-42824000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:42815200-42824000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:42815200-42824000	Weak transcription	HSMM	muscle
30	chr3:42815200-42824200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:42815200-42824400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:42815200-42824400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:42815200-42824600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr3:42815200-42824600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:42815200-42824600	Weak transcription	NH-A	brain
36	chr3:42815200-42824800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr3:42815200-42824800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:42815200-42824800	Weak transcription	Fetal Thymus	thymus
39	chr3:42815200-42827000	Weak transcription	Fetal Lung	lung
40	chr3:42815200-42828200	Weak transcription	Fetal Intestine Small	intestine
41	chr3:42815200-42834800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:42815200-42834800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr3:42815200-42834800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:42815200-42834800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:42815200-42834800	Weak transcription	Fetal Muscle Leg	muscle
46	chr3:42815200-42834800	Weak transcription	Ovary	ovary
47	chr3:42815200-42834800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr3:42815200-42834800	Weak transcription	A549	lung
49	chr3:42815200-42835200	Weak transcription	Right Ventricle	heart
50	chr3:42815200-42836400	Weak transcription	Brain Hippocampus Middle	brain

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