Variant report

Variant	rs9856637
Chromosome Location	chr3:119507632-119507633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119506500..119508290-chr3:119519426..119521149,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13316467	0.85[AFR][1000 genomes]
rs13316524	0.85[AFR][1000 genomes]
rs13318819	0.90[AFR][1000 genomes]
rs28370398	0.85[AFR][1000 genomes]
rs28415065	0.85[AFR][1000 genomes]
rs28464044	0.85[AFR][1000 genomes]
rs28484588	0.85[AFR][1000 genomes]
rs28595123	0.85[AFR][1000 genomes]
rs28678836	0.85[AFR][1000 genomes]
rs6795467	0.85[AFR][1000 genomes]
rs7617259	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7618191	0.95[AFR][1000 genomes]
rs9289133	0.85[AFR][1000 genomes]
rs9810454	0.85[AFR][1000 genomes]
rs9811271	0.85[AFR][1000 genomes]
rs9813490	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9814138	0.85[AFR][1000 genomes]
rs9815987	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9817771	0.85[AFR][1000 genomes]
rs9819218	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9820811	0.85[AFR][1000 genomes]
rs9824097	0.85[AFR][1000 genomes]
rs9834015	0.95[AFR][1000 genomes]
rs9835381	0.85[AFR][1000 genomes]
rs9837808	0.85[AFR][1000 genomes]
rs9842101	0.85[AFR][1000 genomes]
rs9844223	0.95[AFR][1000 genomes]
rs9844543	0.95[AFR][1000 genomes]
rs9847782	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9851058	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9853426	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9858328	0.85[AFR][1000 genomes]
rs9859568	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9860171	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9865259	0.85[AFR][1000 genomes]
rs9866905	0.85[AFR][1000 genomes]
rs9870607	0.85[AFR][1000 genomes]
rs9875512	0.85[AFR][1000 genomes]
rs9881432	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119500200-119514400	Weak transcription	Small Intestine	intestine
2	chr3:119501800-119515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:119503200-119513400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:119505200-119510600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:119505200-119511000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:119505800-119512000	Weak transcription	HepG2	liver
7	chr3:119506400-119510800	Enhancers	Liver	Liver
8	chr3:119507400-119508000	Enhancers	Fetal Intestine Large	intestine
9	chr3:119507400-119508200	Genic enhancers	Fetal Intestine Small	intestine

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