Variant report
| Variant | rs9860820 |
|---|---|
| Chromosome Location | chr3:119002904-119002905 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11916942 | 1.00[EUR][1000 genomes] |
| rs11917054 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11918611 | 1.00[EUR][1000 genomes] |
| rs11919244 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11921860 | 1.00[EUR][1000 genomes] |
| rs11922202 | 1.00[EUR][1000 genomes] |
| rs11927863 | 1.00[EUR][1000 genomes] |
| rs13327592 | 1.00[EUR][1000 genomes] |
| rs4337633 | 1.00[EUR][1000 genomes] |
| rs4687974 | 1.00[EUR][1000 genomes] |
| rs57447123 | 1.00[EUR][1000 genomes] |
| rs58318736 | 1.00[EUR][1000 genomes] |
| rs58369563 | 1.00[EUR][1000 genomes] |
| rs6438493 | 1.00[EUR][1000 genomes] |
| rs72962565 | 1.00[EUR][1000 genomes] |
| rs72968486 | 1.00[EUR][1000 genomes] |
| rs73857025 | 1.00[EUR][1000 genomes] |
| rs7611869 | 1.00[EUR][1000 genomes] |
| rs9810251 | 1.00[EUR][1000 genomes] |
| rs9810388 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9824383 | 1.00[EUR][1000 genomes] |
| rs9828041 | 1.00[EUR][1000 genomes] |
| rs9828213 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9830074 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9841997 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9846150 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9847851 | 1.00[EUR][1000 genomes] |
| rs9853937 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3487859 | chr3:118570588-119419623 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | esv3487860 | chr3:118570588-119419623 | Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:119001600-119003200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr3:119002000-119007600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
