Variant report

Variant	rs9861264
Chromosome Location	chr3:78885531-78885532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11127634	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1480687	0.83[EUR][1000 genomes]
rs1480688	0.84[EUR][1000 genomes]
rs162870	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1843786	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28629289	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs439325	0.93[ASN][1000 genomes]
rs9309819	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9835958	0.83[EUR][1000 genomes]
rs9837982	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9873248	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9877603	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9881587	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78873200-78888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:78875600-78888800	Weak transcription	Fetal Lung	lung
3	chr3:78882000-78894800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:78883400-78888800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:78883600-78888800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:78884600-78888800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:78884800-78888800	Weak transcription	NHDF-Ad	bronchial
8	chr3:78885200-78887200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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