Variant report

Variant	rs9865339
Chromosome Location	chr3:144804359-144804360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144801248..144803452-chr3:144804044..144806004,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10804698	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11712518	0.98[EUR][1000 genomes]
rs11714435	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11714725	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12695792	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4254701	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4362764	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4381987	0.89[AMR][1000 genomes]
rs4405957	0.89[AMR][1000 genomes]
rs4426713	0.89[AMR][1000 genomes]
rs4541446	0.84[AMR][1000 genomes]
rs4681642	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61294843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6440286	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6440289	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6440290	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6440311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6765683	0.98[EUR][1000 genomes]
rs6778480	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6778488	0.98[EUR][1000 genomes]
rs6782683	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6785117	0.82[AMR][1000 genomes]
rs6786747	0.96[EUR][1000 genomes]
rs6788584	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6809974	0.93[EUR][1000 genomes]
rs7427359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427634	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7427709	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7611410	0.84[AMR][1000 genomes]
rs7619338	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7623306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7624601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9289689	0.93[EUR][1000 genomes]
rs9289690	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9827899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9843234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9849958	0.98[EUR][1000 genomes]
rs9859874	0.93[EUR][1000 genomes]
rs9863285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877095	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9917709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1004792	chr3:144658885-145191801	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877577	chr3:144701909-144864974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877578	chr3:144734068-144843921	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144803200-144805200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:144803800-144805000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:144803800-144806000	Enhancers	Fetal Heart	heart
4	chr3:144804000-144804400	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:144804000-144804400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:144804000-144805200	Enhancers	Primary B cells from cord blood	blood

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