Variant report

Variant	rs9865604
Chromosome Location	chr3:81889722-81889723
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CADM2-7	chr3:81889698-81890060	XLOC_002719

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11917955	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs11918127	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs11922735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926683	0.89[EUR][1000 genomes]
rs13314509	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13315052	0.89[EUR][1000 genomes]
rs13320194	0.95[YRI][hapmap]
rs13323074	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13433893	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1524555	0.84[EUR][1000 genomes]
rs17019144	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs17019176	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs17019323	0.89[EUR][1000 genomes]
rs3772893	1.00[CEU][hapmap]
rs3772907	0.95[YRI][hapmap]
rs6769382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771000	0.84[EUR][1000 genomes]
rs6774605	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs6790574	0.84[EUR][1000 genomes]
rs6805400	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs6807821	0.84[EUR][1000 genomes]
rs72908088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908097	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855803	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7616562	0.89[EUR][1000 genomes]
rs7624752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642141	1.00[CEU][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes]
rs9309878	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9810461	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9811220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811796	1.00[CEU][hapmap]
rs9815895	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9823236	0.90[YRI][hapmap]
rs9823805	0.95[YRI][hapmap]
rs9846063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860516	0.89[EUR][1000 genomes]
rs9862555	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs9866781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs998205	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs998207	1.00[CEU][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81886600-81891600	Enhancers	Dnd41	blood
2	chr3:81888600-81889800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr3:81888600-81891400	Enhancers	Fetal Heart	heart
4	chr3:81888800-81889800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:81888800-81889800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:81888800-81890400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:81889200-81894800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:81889400-81890400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:81889400-81890400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:81889400-81890800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:81889400-81891400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:81889400-81895800	Weak transcription	Psoas Muscle	Psoas

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