Variant report

Variant	rs9865893
Chromosome Location	chr3:81985189-81985190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81984085..81985677-chr3:81985757..81987319,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13313910	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13314208	0.94[ASN][1000 genomes]
rs13314900	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs13325804	0.94[ASN][1000 genomes]
rs13326960	0.94[ASN][1000 genomes]
rs13327783	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17479347	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2680276	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs28698455	0.88[ASN][1000 genomes]
rs34665337	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772886	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs62265681	0.82[EUR][1000 genomes]
rs62265683	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62265684	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62265686	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62265712	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548778	0.82[EUR][1000 genomes]
rs6776410	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs6787635	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7633528	0.82[EUR][1000 genomes]
rs7636208	0.94[ASN][1000 genomes]
rs9813371	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs9814843	0.94[ASN][1000 genomes]
rs9816203	0.82[EUR][1000 genomes]
rs9833851	0.81[EUR][1000 genomes]
rs9851559	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs9859620	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875335	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985397	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81981200-81986000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:81983000-81985800	Weak transcription	Dnd41	blood
3	chr3:81984000-81990600	Weak transcription	Psoas Muscle	Psoas
4	chr3:81984600-81985400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:81985000-81985200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:81985000-81986000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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