Variant report

Variant	rs9866372
Chromosome Location	chr3:42853626-42853627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:42843855..42845411-chr3:42851834..42853689,2	K562	blood:
2	chr3:42843855..42848030-chr3:42852189..42853785,3	K562	blood:
3	chr3:42853502..42856729-chr3:42859080..42861862,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181061	Chromatin interaction
ENSG00000144648	Chromatin interaction

rs_ID	r²[population]
rs13433851	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433945	0.82[AFR][1000 genomes]
rs55914160	0.82[AFR][1000 genomes]
rs73829293	0.86[AFR][1000 genomes]
rs9811031	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9831582	0.82[AFR][1000 genomes]
rs9836850	0.82[AFR][1000 genomes]
rs9837432	0.82[AFR][1000 genomes]
rs9849297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9851661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855749	0.82[AFR][1000 genomes]
rs9864269	1.00[AMR][1000 genomes]
rs9877459	0.82[AFR][1000 genomes]
rs9881713	0.82[AFR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42846800-42856400	Weak transcription	Right Atrium	heart
2	chr3:42847200-42856400	Weak transcription	NHEK	skin
3	chr3:42847400-42856200	Weak transcription	Colonic Mucosa	Colon
4	chr3:42849800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:42850800-42854200	Active TSS	Placenta	Placenta
6	chr3:42852000-42853800	Enhancers	Fetal Intestine Small	intestine
7	chr3:42852000-42854400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:42852200-42853800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:42852200-42853800	Enhancers	Fetal Intestine Large	intestine
10	chr3:42852200-42853800	Enhancers	HepG2	liver
11	chr3:42852200-42854000	Enhancers	K562	blood
12	chr3:42852200-42854200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr3:42852400-42853800	Enhancers	Pancreas	Pancrea
14	chr3:42852800-42853800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:42852800-42854000	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:42853000-42853800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:42853000-42853800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:42853000-42853800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr3:42853000-42854000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:42853200-42856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:42853200-42856600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:42853200-42858600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:42853400-42853800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:42853400-42854800	Weak transcription	Fetal Heart	heart
25	chr3:42853600-42853800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:42853600-42854000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr3:42853600-42854200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:42853600-42856000	Weak transcription	Stomach Mucosa	stomach
29	chr3:42853600-42856400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links