Variant report

Variant	rs9867046
Chromosome Location	chr3:23291721-23291722
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10510536	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11926494	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11927173	0.91[ASN][1000 genomes]
rs13314285	0.81[ASN][1000 genomes]
rs1495130	0.90[ASN][1000 genomes]
rs17012800	0.90[ASN][1000 genomes]
rs17012829	0.97[ASN][1000 genomes]
rs1908475	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2017065	0.87[ASN][1000 genomes]
rs35901544	0.81[AMR][1000 genomes]
rs4327332	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57131555	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58724157	0.90[ASN][1000 genomes]
rs60782093	0.91[ASN][1000 genomes]
rs61578857	0.91[ASN][1000 genomes]
rs6765801	0.89[ASN][1000 genomes]
rs6769167	0.87[ASN][1000 genomes]
rs6792370	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73823472	0.81[ASN][1000 genomes]
rs7612463	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7627380	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9831921	0.81[ASN][1000 genomes]
rs9866739	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23274800-23298200	Weak transcription	Aorta	Aorta
2	chr3:23281400-23298200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:23282200-23294600	Weak transcription	A549	lung
4	chr3:23283200-23296000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:23283600-23302200	Weak transcription	Left Ventricle	heart
6	chr3:23283800-23292000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:23285000-23292400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:23289000-23294800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:23289200-23292400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:23290000-23292600	Weak transcription	Brain Angular Gyrus	brain
11	chr3:23290400-23292400	Weak transcription	Brain Anterior Caudate	brain
12	chr3:23290400-23292400	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:23290400-23295800	Weak transcription	Adipose Nuclei	Adipose
14	chr3:23290600-23291800	Weak transcription	Brain Substantia Nigra	brain
15	chr3:23290600-23292400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:23290600-23298200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:23290800-23294800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:23291400-23291800	Enhancers	Thymus	Thymus
19	chr3:23291400-23292000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr3:23291400-23292000	Enhancers	Psoas Muscle	Psoas
21	chr3:23291400-23292200	Enhancers	Primary T cells from cord blood	blood
22	chr3:23291600-23292000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr3:23291600-23292000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr3:23291600-23292200	Enhancers	Duodenum Mucosa	Duodenum
25	chr3:23291600-23292800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:23291600-23298400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links