Variant report

Variant	rs9868478
Chromosome Location	chr3:25198158-25198159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1017421	1.00[EUR][1000 genomes]
rs73149271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25192800-25198200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:25192800-25198200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
4	chr3:25194800-25198200	Weak transcription	Fetal Heart	heart
5	chr3:25195000-25198800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:25196400-25199600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:25196800-25200400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:25197000-25198400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:25197000-25198600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:25197000-25199200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:25197200-25198200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr3:25197200-25198200	Enhancers	Liver	Liver
13	chr3:25197200-25198400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:25197200-25198400	Enhancers	Fetal Muscle Leg	muscle
15	chr3:25197200-25198600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:25197200-25198800	Enhancers	HSMM	muscle
17	chr3:25197400-25198400	Enhancers	Brain Hippocampus Middle	brain
18	chr3:25197400-25198600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr3:25197400-25198600	Enhancers	NHDF-Ad	bronchial
20	chr3:25197400-25198800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr3:25197400-25198800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:25197400-25199000	Enhancers	HUVEC	blood vessel
23	chr3:25197600-25198400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr3:25197600-25198400	Enhancers	Brain Anterior Caudate	brain
25	chr3:25197600-25198400	Weak transcription	HSMMtube	muscle
26	chr3:25197600-25198600	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:25197600-25198800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:25197600-25198800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:25197600-25198800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:25197600-25198800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr3:25197600-25198800	Enhancers	Fetal Lung	lung
32	chr3:25197600-25198800	Enhancers	HMEC	breast
33	chr3:25197600-25205200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:25197800-25198200	Weak transcription	Brain Angular Gyrus	brain
35	chr3:25197800-25198400	Enhancers	NHLF	lung
36	chr3:25197800-25198600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:25197800-25198600	Enhancers	Colon Smooth Muscle	Colon
38	chr3:25197800-25198600	Enhancers	Fetal Stomach	stomach
39	chr3:25197800-25198600	Enhancers	Rectal Smooth Muscle	rectum
40	chr3:25197800-25199200	Enhancers	H1 Cell Line	embryonic stem cell
41	chr3:25197800-25200600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr3:25198000-25198200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr3:25198000-25198400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:25198000-25198400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:25198000-25198600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr3:25198000-25198600	Flanking Active TSS	NH-A	brain
47	chr3:25198000-25199000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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