Variant report

Variant	rs9869267
Chromosome Location	chr3:162084607-162084608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:162084506..162087458-chr3:162087812..162089576,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10084695	0.94[AMR][1000 genomes]
rs1026691	1.00[CHB][hapmap];0.94[AMR][1000 genomes]
rs1026693	1.00[CHB][hapmap];0.94[AMR][1000 genomes]
rs10460867	0.86[AMR][1000 genomes]
rs10936280	0.86[AMR][1000 genomes]
rs10936281	0.86[AMR][1000 genomes]
rs10936282	0.86[AMR][1000 genomes]
rs10936283	0.86[AMR][1000 genomes]
rs11712285	0.94[AMR][1000 genomes]
rs11927487	0.86[AMR][1000 genomes]
rs12696149	0.86[AMR][1000 genomes]
rs1382204	0.94[AMR][1000 genomes]
rs2199604	0.94[AMR][1000 genomes]
rs2318455	0.94[AMR][1000 genomes]
rs2405505	0.94[AMR][1000 genomes]
rs2405506	0.94[AMR][1000 genomes]
rs2405740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2405750	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405753	0.94[AMR][1000 genomes]
rs2405754	0.94[AMR][1000 genomes]
rs2897152	0.94[AMR][1000 genomes]
rs3853161	0.94[AMR][1000 genomes]
rs3853162	0.89[AMR][1000 genomes]
rs3907216	0.94[AMR][1000 genomes]
rs3912100	0.94[AMR][1000 genomes]
rs4263305	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4296607	0.86[AMR][1000 genomes]
rs4296608	0.84[AMR][1000 genomes]
rs4296609	0.86[AMR][1000 genomes]
rs4449332	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4621344	0.86[AMR][1000 genomes]
rs4856629	0.86[AMR][1000 genomes]
rs4856630	0.86[AMR][1000 genomes]
rs4856631	0.86[AMR][1000 genomes]
rs4856632	0.86[AMR][1000 genomes]
rs4856633	0.86[AMR][1000 genomes]
rs4856682	0.86[AMR][1000 genomes]
rs6441452	0.94[AMR][1000 genomes]
rs6441454	0.91[AMR][1000 genomes]
rs6441459	0.86[AMR][1000 genomes]
rs6441460	0.94[AMR][1000 genomes]
rs6441461	0.94[AMR][1000 genomes]
rs6441462	0.89[AMR][1000 genomes]
rs6441463	0.94[AMR][1000 genomes]
rs6764843	0.86[AMR][1000 genomes]
rs6765996	0.94[AMR][1000 genomes]
rs6766883	0.86[AMR][1000 genomes]
rs6766973	0.94[AMR][1000 genomes]
rs6770434	0.94[AMR][1000 genomes]
rs6775708	0.94[AMR][1000 genomes]
rs6776864	0.94[AMR][1000 genomes]
rs6776986	0.94[AMR][1000 genomes]
rs6777189	0.94[AMR][1000 genomes]
rs6789202	0.86[AMR][1000 genomes]
rs6791605	0.86[AMR][1000 genomes]
rs6795724	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6798305	0.94[AMR][1000 genomes]
rs6799150	0.86[AMR][1000 genomes]
rs6801086	0.94[AMR][1000 genomes]
rs6801492	0.94[AMR][1000 genomes]
rs6801686	0.94[AMR][1000 genomes]
rs7633312	0.86[AMR][1000 genomes]
rs7648533	0.86[AMR][1000 genomes]
rs9290119	0.82[AMR][1000 genomes]
rs9813453	0.86[AMR][1000 genomes]
rs9813595	0.86[AMR][1000 genomes]
rs9813898	0.86[AMR][1000 genomes]
rs9817021	0.94[AMR][1000 genomes]
rs9819929	0.94[AMR][1000 genomes]
rs9868667	0.86[AMR][1000 genomes]
rs9875471	0.91[AMR][1000 genomes]
rs9879717	0.94[AMR][1000 genomes]
rs993391	0.85[AMR][1000 genomes]
rs993392	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877724	chr3:162022959-162198135	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877725	chr3:162036879-162216666	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1008920	chr3:162037850-162123354	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002279	chr3:162061779-162156743	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162082600-162085000	Enhancers	Dnd41	blood
2	chr3:162082800-162088400	Enhancers	Fetal Heart	heart
3	chr3:162083200-162086400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:162083200-162087800	Enhancers	Fetal Stomach	stomach
5	chr3:162083600-162085600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:162083600-162086600	Enhancers	Fetal Lung	lung
7	chr3:162083800-162086400	Enhancers	Fetal Kidney	kidney
8	chr3:162084000-162085600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:162084000-162087400	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:162084200-162086000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:162084400-162087000	Enhancers	Colon Smooth Muscle	Colon
12	chr3:162084600-162085600	Weak transcription	NHLF	lung

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