Variant report

Variant	rs9870020
Chromosome Location	chr3:23091512-23091513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58744973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61686844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804016	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73145951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145952	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73145969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9849300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9875332	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3463283	chr3:23088640-23092367	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3463284	chr3:23088640-23092367	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23089200-23096800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:23090600-23103800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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